Friday, August 3, 2018

Immunostaining | An Overview of Paraffin Embedded Tissue

Immunohistochemistry (IHC) is a molecular examine that involves the use of antibodies to detect specific proteins within tissues on microscope slides.   These proteins are visualized with a colored chromogen and viewed with a Bright field microscope.  IHC can be used to detect a single protein in tissues or antibodies can be multiplexed to detect two or more proteins on one slide.  Multiplexing is a brilliant way to analysis how proteins are cooperating together within the paraffin embedded tissue or to view several different cell populations at once.

The first and most important step in any histology procedures, including IHC, is fixation. Typically, tissues are fixed in 10% Neutral Buffered Formalin (NBF), processed and paraffin embedding; formalin-fixed, paraffin-embedded tissue. The length of time tissues are in fixative isn’t critical for routine H&E and special staining procedures; however, it is critical for IHC.  Formalin causes cross-linking within the proteins of tissues; these cross-links can mask the epitopes which need to be available to bind to antibodies in IHC procedures.  Over-fixation can render the tissues unusable for IHC.  Ideally, paraffin embedded tissues for IHC should be fixed for 24-48 hours, and then transferred to 70% ethanol until processing, paraffin embedding and sectioning.

Although over-fixation of paraffin embedded tissues can result in un-breakable cross-linking within proteins in tissue, optimal formalin fixation will also form cross-links.  These cross-links can be removed with a procedure called antigen (epitope) retrieval. The two most common methods of antigen retrieval involve the use of heat or enzymes.  Heat-induced epitope retrieval (HIER) involves superheating the slides to temperatures of 90°C-125°C for up to an hour.  HIER is done by placing deparaffinized and hydrated slides are placed in a buffered solution which is then heated up in a pressure cooker, microwave or steamer.  Enzyme-induced epitope retrieval (EIER) is generally performed on hydrated paraffin embedded tissue sections at either room temperature or at 37°C for 5-30 minutes.

Once retrieval procedures are completed, the tissues are blocked for endogenous tissue elements which can interfere with staining or cause background staining.  These endogenous elements can include: proteins, avidin, biotin and peroxidase.  Once blocking is completed, the antibody is applied to the tissue.

Next, antibodies are applied to the paraffin embedded tissue sections. Irrelevant control antibodies of the same immunoglobulin isotype as the primary antibody are applied to a parallel set of slides. For example, if the primary antibody is a Mouse anti-CD3, isotype IgG2a; the irrelevant control antibody is Mouse IgG2a.  The irrelevant control antibody is applied at the same concentration as the primary antibody. The isotype control antibody controls for non-specific binding of antibody to the test tissue. The antibodies are incubated on the slides for 30-120 minutes at room temperature, or overnight at 2-8°C.

The next step is antibody detection.  Detection is the step in which the antibody is bound to a reagent that will react with a chromogen.  The detection is usually done with a secondary antibody that is labeled with an HRP (horseradish peroxidase) polymer.  If the primary antibody is a mouse, than the detection step could be a Goat anti-Mouse HRP polymer.  The polymer is generally applied to the slide for 30-60 minutes.

After the detection step, the colored chromogen is added, and the slides are counter stained.  The most common substrate chromogen is DAB (diaminobenzidine), which produces a brown color when catalyzed by HRP.  Thus, the protein or cell of interest will appear brown on the slide.  Although brown DAB is the most common, there are other colors available; such as purple, pink/red, blue, green and black.  The slides are then counter stained with Hematoxylin, which stains the nuclei a blueish-purple.  Slides are then dehydrated in ethanol, cleared in xylene and cover slipped with resinous mounting medium.

If you want to know more about paraffin embedding, visit our site immunostaining. Here, our team of medical experts will give you all brief history.

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